YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAA1_CAMJR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.95
Transmembrane Helix	11	32	0.91
Non-Cytoplasmic	33	60	0.94
Transmembrane Helix	61	80	0.92
Cytoplasmic	81	96	0.89
Transmembrane Helix	97	118	0.94
Non-Cytoplasmic	119	127	0.77
Transmembrane Helix	128	148	0.88
Cytoplasmic	149	156	0.80
Transmembrane Helix	157	177	0.91
Non-Cytoplasmic	178	183	0.69
Transmembrane Helix	184	205	0.92
Cytoplasmic	206	215	0.65
Transmembrane Helix	216	240	0.69
Non-Cytoplasmic	241	257	0.58
Transmembrane Helix	258	279	0.73
Cytoplasmic	280	283	0.32
Transmembrane Helix	284	298	0.73
Non-Cytoplasmic	299	299	0.02
Transmembrane Helix	300	315	0.71
Cytoplasmic	316	330	0.56
Transmembrane Helix	331	352	0.88
Non-Cytoplasmic	353	364	0.59
Transmembrane Helix	365	385	0.91
Cytoplasmic	386	389	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNIVHKLKT LVLNEAFGGV LLIVCTLLAL LVQNGSFSEH YREFLNLKVG FSVGEFELNK  60
   61 PFLLWINDGL ISIFFFAIGL ELKKEFLHGD FKNPKNIVLP FMAALGGILI PAMLFALVNI 120
  121 GDAYTLKGWA IPTATDTAFA LAILMMCGKH IPSSLKIFLL SLAIFDDVGA ILIIAIFYTT 180
  181 KLSIVAFVVA GLAILAMLIL NLLGITRKSF YFICSVILWI SVLKSGVHAT LAGIVTAFFI 240
  241 PMQTKNGEAF LEEIYESLKF WIAFIILPLF AFANAGVNLS NIDIGAIFSG VSIGIFLGLF 300
  301 VGKQVGVFLF SYLAIRFKFA ALPQGSNLKQ LYGVCILTGI GFTMSLFIDG LAYEVSDIFN 360
  361 YADNLAILIA SFCSGIWGFI YLKFFTTRS