YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57167441, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.87
Transmembrane Helix	13	31	0.94
Non-Cytoplasmic	32	37	0.65
Transmembrane Helix	38	56	0.93
Cytoplasmic	57	84	0.88
Transmembrane Helix	85	108	0.83
Non-Cytoplasmic	109	128	0.93
Transmembrane Helix	129	149	0.94
Cytoplasmic	150	158	0.78
Transmembrane Helix	159	179	0.92
Non-Cytoplasmic	180	197	0.88
Transmembrane Helix	198	218	0.86
Cytoplasmic	219	239	0.85
Transmembrane Helix	240	264	0.87
Non-Cytoplasmic	265	290	0.95
Transmembrane Helix	291	313	0.89
Cytoplasmic	314	332	0.93
Transmembrane Helix	333	353	0.92
Non-Cytoplasmic	354	359	0.88
Transmembrane Helix	360	383	0.90
Cytoplasmic	384	394	0.88
Transmembrane Helix	395	413	0.97
Non-Cytoplasmic	414	416	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTPKWTSHD TRWVLSLFGT AIGAGVLLLP ISAGLGGLIP LLVILVLAFP MTYLAHRNLC  60
   61 RFVLSSSNPK DDITFVAESY FGKGGGFLIT LLYFFAILPI LLVYSANLTT TLLEFLINQF 120
  121 NFNADLTHAA RWWVSFLIVG VLVLISILGE NVVTKAMSFL VFPFIIFLFI FSLLLIPQWN 180
  181 SSLFANVDFS VISTSNFWVT LWLVIPVMVF SFNHSPIISS LACYCKKEYG DYAEPRARKI 240
  241 ISLAIILMVF VVMFFVFSCA LTFTPEDFAS AKDQNINILT FIANKFPEVS LLAYVGPIVA 300
  301 LVAISKSFLG HYLGSQEGLN GILYKASNGR IQGKFAQTLT AIITFAIAWL VAYKNPSVIG 360
  361 IIEAIGGPVL AILLFLMPLY CIYRFDILAR FRNKFLDLFI LVMGIVAISA AIHDLL