YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57167432, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.51
Transmembrane Helix	10	31	0.92
Cytoplasmic	32	59	0.58
Transmembrane Helix	60	81	0.89
Non-Cytoplasmic	82	87	0.50
Transmembrane Helix	88	110	0.87
Cytoplasmic	111	114	0.55
Transmembrane Helix	115	136	0.89
Non-Cytoplasmic	137	141	0.51
Transmembrane Helix	142	166	0.90
Cytoplasmic	167	183	0.58
Transmembrane Helix	184	206	0.91
Non-Cytoplasmic	207	233	0.59
Transmembrane Helix	234	263	0.77
Cytoplasmic	264	272	0.50
Transmembrane Helix	273	294	0.89
Non-Cytoplasmic	295	300	0.49
Transmembrane Helix	301	322	0.91
Cytoplasmic	323	328	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNLNTHSKI LVIIGLLVAY IIASFIALCL GDENLNPKEL FSYIFSQDEI LRQIIIDGRL  60
   61 PRIIMAILIG MLLASSGAIT QNVFSNPIAD PYIIGIASAA TFGAVLAYLL KLNDYYYGIL 120
  121 GFVCSAFFAL GVFKISSKAS IATLLIIGIA ASSFLGAFTS FFTYLIGEDS FKIVAWLMGN 180
  181 IGNASWFRVG ILILPLIFCL FYFYAHKNEL NILLSGDDEA RNLGVNAQKL KINLLIVSSL 240
  241 AVSFAVAFSG LIGFVGLIIP HTIRLLLKNY DNALVIPLCT AFGGLFLLIC DTLARTLLTP 300
  301 VQIPIGILTA FFGAPIFLYL ALSARRFL