YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUOH_CAMJR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.59
Transmembrane Helix	11	32	0.91
Non-Cytoplasmic	33	47	0.51
Transmembrane Helix	48	65	0.58
Cytoplasmic	66	77	0.93
Transmembrane Helix	78	100	0.93
Non-Cytoplasmic	101	119	0.88
Transmembrane Helix	120	141	0.93
Cytoplasmic	142	155	0.84
Transmembrane Helix	156	180	0.84
Non-Cytoplasmic	181	195	0.80
Transmembrane Helix	196	214	0.93
Cytoplasmic	215	245	0.91
Transmembrane Helix	246	266	0.93
Non-Cytoplasmic	267	273	0.74
Transmembrane Helix	274	295	0.93
Cytoplasmic	296	309	0.92
Transmembrane Helix	310	331	0.93
Non-Cytoplasmic	332	332	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDFAFFALE ALIKCIIIIA IFASLAGLAT YAERKVLAYF QRRIGPDMVG PFGLIQLVAD  60
   61 MIKLFTKEDI IPSNSQKFIF AIAPLISAIC AFVSLAAIPM LPEFTLFGKV IQPIVADINV 120
  121 ALLFVIGTSG LCFYAVFLGG LASNNKWSIL GAARGLVAII SYESVGALAL IAIVMLVGSF 180
  181 SLVDINNYQS DGFFSWLIFK QPLAFVLFII ALFIETNRTP LCLTENDAEI VAGYGTEYSG 240
  241 LRWGMFFIGE YASMIAGAIL VTLLFLGGFN SFWIIPGWIM MIVKSSFIFF WYFWARAAFP 300
  301 QLRPDQVMKM CYLILIPLAV LNLLITALAV LL