YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238576, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.99
Transmembrane Helix	8	31	0.90
Non-Cytoplasmic	32	38	0.77
Transmembrane Helix	39	59	0.88
Cytoplasmic	60	74	0.91
Transmembrane Helix	75	98	0.90
Non-Cytoplasmic	99	104	0.83
Transmembrane Helix	105	125	0.93
Cytoplasmic	126	136	0.79
Transmembrane Helix	137	158	0.92
Non-Cytoplasmic	159	184	0.91
Transmembrane Helix	185	204	0.94
Cytoplasmic	205	215	0.95
Transmembrane Helix	216	238	0.85
Non-Cytoplasmic	239	249	0.83
Transmembrane Helix	250	271	0.93
Cytoplasmic	272	282	0.92
Transmembrane Helix	283	307	0.87
Non-Cytoplasmic	308	312	0.84
Transmembrane Helix	313	335	0.90
Cytoplasmic	336	347	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGFIDRFLT LWIFLAIFLG LILGIIFPNI ALFWNLFEYK SVNVVLTLCL ILMMYPPLAK  60
   61 VDYAKLSKVF DSKKVILLSM ILNWFIGPLL MFILAFIFLK DEPLYMQGVI IIGLARCIAM 120
  121 VVVWSDLAKG DREYTSALVA MNSIFQILFF STLAYIYLDF LPKLLGQSTL ATSLDIDFSA 180
  181 LSKNVLIYLG IPFLMGFITR TLLLKYKSKR WYENTFLPKI SPITLITLLA TIIIMCSYKA 240
  241 NEVFHLPLEA LKIAFVLTLY FIFMFFLTWF ISKKNHLSYP KTCSLCFSAS GNNFELAIII 300
  301 CIATFGLHSE QAFASIIGPL VEVPVLILLV KWALGKSLNS KKMNQAS