YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238532, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKVFVTLLL SVVSLFAYGS ERMGQDTQIW DFHRITNIPN YDTFGKLWTT LQGEYIATIA  60
   61 LIAVIAVLSA FALHYMVIGP KQFSHDGKKI YAFTLFERLF HFIAAISWVI LVPTGFVMMF 120
  121 GATFGGGLFV RVCKNLHAFA TVLFIISIIP MFLWWIKRML PASYDIRWMM IVGGYLSKVK 180
  181 RPVPAGKFNF GQKSWYYIAV FGGFLMIITG GFMYFLDFNS TAIQGLFGLT QIELLRISAI 240
  241 VHNFLGIVCA VFFGVHIYMA VFAIKGSIHS MISGYKEEEE VYILHSYWYK ELSNKKQIEP 300
  301 SFSYDPNVKI

Type	Start	End	Confidence
Signal Peptide	1	19	0.94
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	55	0.96
Transmembrane Helix	56	78	0.95
Cytoplasmic	79	98	0.96
Transmembrane Helix	99	122	0.91
Non-Cytoplasmic	123	135	0.85
Transmembrane Helix	136	156	0.94
Cytoplasmic	157	194	0.93
Transmembrane Helix	195	216	0.95
Non-Cytoplasmic	217	238	0.88
Transmembrane Helix	239	262	0.89
Cytoplasmic	263	310	0.94