YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57167297, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFYEVEFLK NNQNYTKTIK AENLNTAQAK ALSKNWKIID IKEIQKSNFQ RLKDENFILF  60
   61 FKELALLCEV GLSVQEAIRE LYLMHSCKIM KKILDNLILA QNLNQAFENA NFGLNRAELA 120
  121 LIKTAEKTGK ISEVFSQISK LREKSLESQK QLKKAFRYPT LVFLSIIGAF LFLMLFVVPN 180
  181 FKDLFENLGA SLPFITHVML EIYNFLDDYG IFCIFLFVVF IVMLILAYKN FHSFAFSCDF 240
  241 LFLKIPLISR LIIYNQNYYF FMVFSLLLKN GISISKAFDL AIIGLENKFL IFQYKKLFSF 300
  301 IDSGLELSQA FKKIDIFDSL VFSMLSVAMK SGRLEVLSEE IAKYYQQKSE NLMDRFLVFL 360
  361 EPMMTLFVAF LVLFLALGIF LPMWELSSGV NFN

Type	Start	End	Confidence
Cytoplasmic	1	157	0.98
Transmembrane Helix	158	178	0.93
Non-Cytoplasmic	179	207	0.84
Transmembrane Helix	208	228	0.92
Cytoplasmic	229	362	0.68
Transmembrane Helix	363	384	0.89
Non-Cytoplasmic	385	393	0.84