YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57167254, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFSTKIKKE FSGKNVLLLQ GPVGNFFHHL AIKMKKKQTK VFKLNFNGGD FFFYPSGTRC  60
   61 KCDEKDLENF YRDFFQSKKI DAILMYNDCR IIHAKAIKVA KELGIEIWIF EEGYLRPYCI 120
  121 TLEKDGVNAN SSLPRDKNFY LSQNIFTKES IKEIPGGFKF MAFDAFLYWL FAFILAPFFN 180
  181 NKLHHRTLYP FEFLFWFRSL YRKYLYKITE KKLNEKIYNL EKKYFLAILQ VYSDTQIKYH 240
  241 YKKSIEHFID ETILSFANHA RAKSYLVFKH HPMDRGYKNY SKLINDLSQK YHVEGRVLYV 300
  301 HDTHLPVLLR KALGCITINS TVGLSAILEG CPTKVCGNAF YDFEGLSYPK KLQFFWREAH 360
  361 AYKPNPVLVC NFKKYLLQTN QFNGNFYKNF FLDK

Type	Start	End	Confidence
Cytoplasmic	1	159	0.68
Transmembrane Helix	160	179	0.69
Non-Cytoplasmic	180	394	0.83