YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57167200, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.88
Transmembrane Helix	7	27	0.93
Non-Cytoplasmic	28	35	0.87
Transmembrane Helix	36	59	0.89
Cytoplasmic	60	68	0.81
Transmembrane Helix	69	90	0.86
Non-Cytoplasmic	91	98	0.75
Transmembrane Helix	99	120	0.91
Cytoplasmic	121	126	0.88
Transmembrane Helix	127	150	0.90
Non-Cytoplasmic	151	169	0.91
Transmembrane Helix	170	190	0.94
Cytoplasmic	191	219	0.88
Transmembrane Helix	220	244	0.86
Non-Cytoplasmic	245	258	0.73
Transmembrane Helix	259	280	0.93
Cytoplasmic	281	287	0.68
Transmembrane Helix	288	307	0.92
Non-Cytoplasmic	308	312	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKKMLILSF LTLGMIGIFI LVGLNGFDEY ALKSRFLQIA AIIIVAICIA VSTVIFQTLC  60
   61 NNKILTPAII GLDSLYMLLQ SALIFSFGAA NLSVYKNDIN FLITLVCMVV FSLGLYKILF 120
  121 SSDRSIYLIM LLGLVFGTLF STLSSFFEVL IDPDEFMVIQ GRMFASFDNI AFDVLILAYI 180
  181 ISFLSFIWIF RYMKFLDPLN LGKDLAINLG INYQKISKQL MIIIAILTSI STALVGPITF 240
  241 LGLLVVNITY ELFKTAKHSI LLSACILISI LALLGGVFFV SRVFDYNATI SVVINFLGGI 300
  301 YFIYLVLKGN KL