YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57167199, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.51
Transmembrane Helix	11	31	0.95
Non-Cytoplasmic	32	51	0.54
Transmembrane Helix	52	73	0.90
Cytoplasmic	74	80	0.50
Transmembrane Helix	81	103	0.55
Non-Cytoplasmic	104	107	0.57
Transmembrane Helix	108	130	0.88
Cytoplasmic	131	138	0.91
Transmembrane Helix	139	163	0.91
Non-Cytoplasmic	164	184	0.93
Transmembrane Helix	185	203	0.92
Cytoplasmic	204	213	0.76
Transmembrane Helix	214	236	0.87
Non-Cytoplasmic	237	240	0.62
Transmembrane Helix	241	263	0.87
Cytoplasmic	264	269	0.91
Transmembrane Helix	270	292	0.92
Non-Cytoplasmic	293	297	0.80
Transmembrane Helix	298	316	0.95
Cytoplasmic	317	322	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFKHILSLK VLIALLLFFG MISLFIGVIS INVKDILNLN STQLEIITLT RIPRLIAILL  60
   61 TGMSLSICGL IMQQLTQNKF VSPTTAGTMD CAKFGILISL IFFTGASFFI QAIIASIFAL 120
  121 LGSFIFIQIL RKIKLKDVIF VPLIGLMFGG IISAITTFFA YALNYIQNIQ GWLQGSMANV 180
  181 MQGNYELLYI SLPLFILAYF LAHKITIVGM GEDIALNLGI SYNGILFLGL MIVSIITSLV 240
  241 IVSVGIIPFL GLIIPNLVAL YLGDNLRKNL IYIALCGALF LLVCDIIARL VIFPFEMPLS 300
  301 ITTGVLGSLI FIFLLLKRKA YA