YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238390, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNTTRIISA LVMIGAIIII ALIDQFFINF IVFAVLLYLS FSEAKKLFAL ENISIIPLAI  60
   61 AFILGSLSHK ALLFGILALL LVVGYLVYKK ASLKPALIYI YPSLPILALW QVYLDQGMFA 120
  121 LFWLIIIVAA CDSGAYFIGK LMGKTPFSPT SPNKTLEGVI GGLICASVIG TILGVFVYSF 180
  181 WLSLLCSFFV AIFAVIGDLL ESYFKREAGV KDSGDLIPGH GGMLDRIDAV IIAAFVMVAL 240
  241 L

Type	Start	End	Confidence
Cytoplasmic	1	6	0.59
Transmembrane Helix	7	37	0.78
Non-Cytoplasmic	38	54	0.55
Transmembrane Helix	55	88	0.75
Cytoplasmic	89	95	0.83
Transmembrane Helix	96	114	0.90
Non-Cytoplasmic	115	118	0.93
Transmembrane Helix	119	139	0.94
Cytoplasmic	140	154	0.88
Transmembrane Helix	155	176	0.87
Non-Cytoplasmic	177	180	0.59
Transmembrane Helix	181	200	0.86
Cytoplasmic	201	241	0.67