YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238333, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.96
Transmembrane Helix	11	34	0.87
Non-Cytoplasmic	35	40	0.87
Transmembrane Helix	41	64	0.74
Cytoplasmic	65	71	0.72
Transmembrane Helix	72	96	0.87
Non-Cytoplasmic	97	126	0.83
Transmembrane Helix	127	148	0.89
Cytoplasmic	149	155	0.82
Transmembrane Helix	156	175	0.86
Non-Cytoplasmic	176	187	0.70
Transmembrane Helix	188	212	0.86
Cytoplasmic	213	225	0.81
Transmembrane Helix	226	245	0.96
Non-Cytoplasmic	246	290	0.58
Transmembrane Helix	291	325	0.77
Cytoplasmic	326	345	0.78
Transmembrane Helix	346	367	0.93
Non-Cytoplasmic	368	380	0.70
Transmembrane Helix	381	402	0.79
Cytoplasmic	403	408	0.67
Transmembrane Helix	409	430	0.91
Non-Cytoplasmic	431	447	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQFGLDRRT FKILLAGYII IALFGALLLH SSWAHTTPID FLDAFFTSTS AVSMTGLVVK  60
   61 NTAVDFTLAG QIIILALVQI GGLGYMGIGL FVYILIRKKV GFSARNLLKE SLFYPSMDGL 120
  121 FKFFKKVLLF IFTIELIGAI LLTMRFALEM NFKKALWFGI FHSISAFNNS GFTIFEHGLI 180
  181 AYKHDITINL IITSLIIIGG LGYFVLVELY FFQRKKLQNL SLHTKIVVVA SIFLILSSTL 240
  241 IIFAFEYSNP QTIGHFSFFD KILSSYFIAI NYRTAGFNTL DMGHLHDASL FFGSLFMVIG 300
  301 GAPGGTAGGM KVTTVMVLLL YAYWSIRDGR VRIFGHEIPR ETISKAFIIA VGSAVYIVIA 360
  361 VILLSLLESK FDFIALLFET SSAFATVGIS VGNGGTLSLC ALFSDPSKVI IIIMMLSGRI 420
  421 GVFAFLLSVF KQDKSIHLKF PEGKVNL