YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57167045, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIDLIVVG AGPTGIGCAV EAKLKNKEVL ILEKSNNICQ TLMQFYKDGK RVDKAYKGCE  60
   61 GTNHGHVPFE DGTKESTIET FQNALKEHNI EVEFGSEVES VKNENGVFLV STAKGVYECK 120
  121 NIIVAIGRMG KPNKPDYKLP MTLTKIINFN ANSVLANEKI LVVGGGNSAV EYAVDLANSN 180
  181 QVSLCYRKKE FTRLNDINLK DIHEAGNSGK VELKLGIDIN EVEDDNGKAK VNFTDGTSDI 240
  241 YDRIIYAIGG STPLDFLQKC GINVDDKGVP LMDENKQSNV KGIFVAGDIT TKNGASIVTG 300
  301 LNDAVKILSV L

Type	Start	End	Confidence
Signal Peptide	1	22	0.68
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	311	0.99