YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238139, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDNDSITKA LEKSGFSRRD FMKWAGAMTA FLALPASFTP MVAKAAELAD RLPVVWLHMA  60
   61 ECTGCSESLL RSDTPTIDSL IFDYISLEYH ETVMAAAGWQ AEENLESAIQ KHKNKYILMV 120
  121 EGGIPMDDTE HFLTIGAHGK TGYELSKMAS ENALAIFAIG TCSSFGGIQA ARPNPSNAQP 180
  181 LSKVTSKTVI NVPGCPPSEK NIVGNVLHYL LFGELPALDV YNRPKWAYGL RIHDLCERRG 240
  241 HFDAGEFVHA FGDEGAKQGF CLYKVGCKGP YTFNNCSRER FNQHTSWPIQ AGHGCIGCSE 300
  301 PNFWDTMGPF EEPMASRKFD TVFGLGADSV SDKIGIGVLT LTGVAIAAHA VISSMQKDKE 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	20	0.57
Transmembrane Helix	21	43	0.54
Non-Cytoplasmic	44	360	0.86