YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166868, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.96
Transmembrane Helix	30	52	0.88
Cytoplasmic	53	64	0.86
Transmembrane Helix	65	86	0.91
Non-Cytoplasmic	87	141	0.96
Transmembrane Helix	142	161	0.93
Cytoplasmic	162	180	0.93
Transmembrane Helix	181	204	0.87
Non-Cytoplasmic	205	212	0.79
Transmembrane Helix	213	237	0.92
Cytoplasmic	238	275	0.63
Transmembrane Helix	276	293	0.39
Non-Cytoplasmic	294	299	0.56
Transmembrane Helix	300	320	0.77
Cytoplasmic	321	329	0.64
Transmembrane Helix	330	354	0.81
Non-Cytoplasmic	355	363	0.71
Transmembrane Helix	364	381	0.90
Cytoplasmic	382	432	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIGIITGIV LGYTDKELAI ASKPGVDYFI GALKVLIGPI IFVTLVLGII SLESLKKVGS  60
   61 IGAKAVIYFE VVSTLALAIG IFMANVMQPG HGMNLDPSQL DTKSVQKYIS QTTEVSASSE 120
  121 IMHILKDAMP TDIITPFTEG KTIQVLVIAI ITALIISLMR IEDKQAIQRV FEVVQNFVFK 180
  181 ILQIIMYFSP IAAFSAMAVL IAQYGIGSLI NLAYLLLVML ISCLVFIFGI LGLICYFAKV 240
  241 NIFKFMRFIS REVLIVFATS SSESALAPLM RKLEKAGLSK ATVGLVLPTG YSFNLDCTNI 300
  301 YLAMSLIFLA QAFNVNLSLA HEISILIVLM IASKGAVGVT GSGFIVLGST LAALGNMEIS 360
  361 EANATLAQVL PVAAIGVLLG VDKFMSEMRA VGNLCGNSVA ALIVAIWDKQ IDWEKFRYAM 420
  421 DNPEKFHNAG MN