YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166839, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKFLSHEPL ANKSCHHNHE EHSHEHHHSH ADARSVDKKI LKISLLMTFS MMLVQFIYSI  60
   61 LSNSLALLSD TLHMFSDVFA LALSFLAIIA VEKWQDHQKT FGYFRLEVLV AFINALTIIL 120
  121 SALFIIYEAI EKFINPKEID AKTMIIVAIL GFLVNGINAL MMFKGANLEN VNMKSAFLHM 180
  181 MSDLLGSLAV IIGGIVVYFS GIVYIDTILA IVLSILLLRW AIILLKQSAN VLLESSPVDI 240
  241 EKVRQVLLLN PSVDEVVDLH ITQITNKMLV ASMHLKVRVC NLKEFEKLSQ DLSHKLLHEF 300
  301 EIGHITIQPI RSENEI

Type	Start	End	Confidence
Cytoplasmic	1	42	0.96
Transmembrane Helix	43	62	0.92
Non-Cytoplasmic	63	71	0.76
Transmembrane Helix	72	91	0.92
Cytoplasmic	92	107	0.75
Transmembrane Helix	108	127	0.94
Non-Cytoplasmic	128	142	0.86
Transmembrane Helix	143	163	0.92
Cytoplasmic	164	175	0.85
Transmembrane Helix	176	197	0.90
Non-Cytoplasmic	198	201	0.71
Transmembrane Helix	202	223	0.89
Cytoplasmic	224	316	0.98