YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237996, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRPQLIYI LPNLFTAASA FLGVISIIAS IHGNYYTALI YIILSLICDG LDGRVARLTN  60
   61 STSKFGVEFD SLADLVAFGV APAVLFYMAI GYDFGKLGSL ITAFFVVFGA IRLARFNVTT 120
  121 GTYEPSVFIG LPIPTAAVVS AIWTYAFISY DFLKPYGVVF LVLQAILGLL MVSNIRYPSF 180
  181 KKLDFNRSSV LKVLIILIII FSFLYLYPLE SLVILASLYV LYGIIRVLYT IIVSKFKIRN 240
  241 QE

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	29	0.95
Non-Cytoplasmic	30	36	0.70
Transmembrane Helix	37	56	0.89
Cytoplasmic	57	70	0.83
Transmembrane Helix	71	90	0.92
Non-Cytoplasmic	91	96	0.78
Transmembrane Helix	97	116	0.93
Cytoplasmic	117	126	0.86
Transmembrane Helix	127	147	0.96
Non-Cytoplasmic	148	155	0.78
Transmembrane Helix	156	177	0.90
Cytoplasmic	178	187	0.91
Transmembrane Helix	188	207	0.93
Non-Cytoplasmic	208	212	0.78
Transmembrane Helix	213	233	0.89
Cytoplasmic	234	242	0.88