YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237910, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKQKIAIV GATGAVGEEL LNVLDELDFP VESILPLASA KSVGSEVEFK GKAYKVKELT  60
   61 ENVFKENPID IAFFSAGGSV SEKYAKFAVE SGAIVIDNTS HFRMEKDVPL VVPECNPEDI 120
  121 KDWKKTGIIA NPNCSTIQMV QVLKPLNDAF NLKRVDVSTY QAASGAGKEG MQELVEAMQS 180
  181 FFAFKLDEFE PQTFPYTLAL NLIPQIDVFM DNDYTKEELK MVNETQKILH KNLEVSATCV 240
  241 RVPVLRSHSE AITMHFEKEI DVKKAKEILE KAPSVIVIDD PKNKKYPMPL MTSDTNETYV 300
  301 GRIRADVYDK KILHLWCVAD QIRVGAATNA VRIAQKWLEL KNK

Type	Start	End	Confidence
Signal Peptide	1	17	0.52
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	343	0.99