YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166707, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	27	0.93
Non-Cytoplasmic	28	33	0.83
Transmembrane Helix	34	54	0.90
Cytoplasmic	55	62	0.79
Transmembrane Helix	63	82	0.92
Non-Cytoplasmic	83	102	0.89
Transmembrane Helix	103	126	0.90
Cytoplasmic	127	132	0.83
Transmembrane Helix	133	152	0.92
Non-Cytoplasmic	153	169	0.88
Transmembrane Helix	170	191	0.94
Cytoplasmic	192	219	0.89
Transmembrane Helix	220	243	0.78
Non-Cytoplasmic	244	255	0.70
Transmembrane Helix	256	280	0.91
Cytoplasmic	281	304	0.75
Transmembrane Helix	305	324	0.87
Non-Cytoplasmic	325	350	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVRIKVSHL IFLIASIIFI FISPYIFGDY GLNIVNQIAI FIILAVSYNL INGVTGQFSL  60
   61 EPNGFVAIGA YVAALVLLSA DAKNDQFFLD GPSSFILAIH SNSFILALIM AGICSSLLAL 120
  121 ILAFAVFRVR GDYLAIVTLG FGIIIKIAAI NFPSITNGSR GLVDIPQFST IYWTGGIAIV 180
  181 AVILILNIVY SKYGRAMKAI RDDEDAASAM GINTFWIKTL AFSTSAFLEG VGGGLLACLL 240
  241 TTVSPTQFDF LLTFQLLIII VLGGLGSTTG AIIGAILVIG GSEWLRFLDE LNIKIDSLNL 300
  301 YIQSTPGLRM VVFSIVLILV MLFARKGIMG YYELSDVIRG IKKRFKRSKK