YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166572, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFIQKNKN FKPLKPLSKS KIITNLILLI LFLILFCYCS FSVSAYHFDF SAIATYKEKF  60
   61 LQGFLNTLII SFFSLLLSII LGGVFCAFSL SSIVFLRFLS TFYIELIRGT PLLVQVLLIY 120
  121 YIIANNLGLD NRYVAGVIIL SCFSAAYLAE IFRAGILSIS ISQLESARAL GLKEMQVFAY 180
  181 VIFPQALKNI LAPLSGQFAN LIKDSSLLSV IAVNELTQSA QEINSYTFAT LEAYVILAIT 240
  241 YLVLTLPISI FSRYLERKCQ K

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	45	0.86
Non-Cytoplasmic	46	68	0.91
Transmembrane Helix	69	95	0.85
Cytoplasmic	96	105	0.74
Transmembrane Helix	106	124	0.94
Non-Cytoplasmic	125	132	0.85
Transmembrane Helix	133	156	0.88
Cytoplasmic	157	176	0.82
Transmembrane Helix	177	192	0.83
Non-Cytoplasmic	193	232	0.82
Transmembrane Helix	233	252	0.91
Cytoplasmic	253	261	0.81