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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|57166570, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKKSFLKIY GLIPFLLIAF INAFVDLGHK IIIQNTIYKA YEGSEQLFLN AIVNALILLP  60
   61 FILMLSPSGF LADKYPKNIV MKISAIFNVI LTLIICICYY SGAFWMAFIF TFIMGAQAAI 120
  121 YSPSKYGFIK ELVGKDFLAM GNGVINAVSI VAILAGMALF SLSFESLYSS MYNQTDEILK 180
  181 EVAPLGIVLI LFSCIEVFFA WRLPKLKQTN KDLVFNKKDY IRGKLLINNL KLVFKNKTIW 240
  241 LCIIGISFFW AISQLYLVSF PVFAKNELFI ENTFYVQISL AFSGIGVILG SLVAGKFSKN 300
  301 YIELGFIPLG ALGMFLMAFL MPYFISLLSY SFLFFFFGFC GALFIIPLNT LIQFHAKENE 360
  361 LGQILAGNNF FQNIAMLGFL LLATLFAKFE INVIYLFYFI ALVTFIGSFY ILLKLPFSLV 420
  421 RILLSIAFLQ RYRLLVEGFE NIPEKGGALL LGNHISFIDW AVVQMAIPRK IYFVMERSIY 480
  481 SKWYIKIFLD KFGIIPVSST GSKTSLELIA KHIKEGNLVC LFPEGTLSRH GQLNEFKAGF 540
  541 ELACECLSED DGKIIPFYIR GLWGSAFSRS DEEFSARNRT LNKRKIAIAF GKAMPLHSKK 600
  601 DEVKAKVFEL SFMAWKSQCE AMHTIARAWI DTAKKNLNQI AIIDTLAGDI SYRKMLTLSL 660
  661 FLNFFIKRKS KELNINPQRG SYAPKEEAIG ILLPASFASS LTNLSVLIAE KIAVNLNFTA 720
  721 GEKALKAAIK NAQISQIYTS KTFLEKLANK GINLNFDTNI HLIYFENIVE DFKMQKTKIF 780
  781 SMMLAVSIIP SFILKSIFTP SKNNLAIAAI LFSSGSEGSP KGVMLNNRNI LSNIAQISDV 840
  841 LCTRNNDVIL SSLPPFHAFG LTVTTFLPLL EGIKSITFSD PTDALGVAKA VAKNNVTIMC 900
  901 GTSTFLGIYA RNKKLDALMF ESLRIVVSGA EKLKNEVRTT FEMKFKKSIF EGYGATETTP 960
  961 VASVNLPNHF DVDYWLIHRA NKEGSVGMPL PGTAVRIVNP NNYENLKTNE DGLILIGGHQ1020
 1021 VMVGYLNDKE KTDEVVKEID GIRWYNTGDK GHLDEDGFLY IVDRYSRFAK IGGEMISLGA1080
 1081 IEEEIAKFID TEVVKFCATS LEDEKKGEQI VLLIECNNEI FEGVCEAIKN SNIPTLFKPR1140
 1141 YYFQIEKIPL LGSGKVDLKK VKELAKNLAI 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle