YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237762, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.90
Transmembrane Helix	8	27	0.94
Non-Cytoplasmic	28	36	0.82
Transmembrane Helix	37	57	0.92
Cytoplasmic	58	85	0.90
Transmembrane Helix	86	109	0.90
Non-Cytoplasmic	110	137	0.92
Transmembrane Helix	138	157	0.91
Cytoplasmic	158	168	0.77
Transmembrane Helix	169	189	0.92
Non-Cytoplasmic	190	212	0.87
Transmembrane Helix	213	235	0.90
Cytoplasmic	236	248	0.85
Transmembrane Helix	249	271	0.93
Non-Cytoplasmic	272	297	0.92
Transmembrane Helix	298	320	0.93
Cytoplasmic	321	340	0.88
Transmembrane Helix	341	362	0.95
Non-Cytoplasmic	363	381	0.89
Transmembrane Helix	382	404	0.88
Cytoplasmic	405	419	0.96
Transmembrane Helix	420	444	0.87
Non-Cytoplasmic	445	446	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTYFSKIGF VLAVAGGAVG LGNAWKFPTL SAENGGFVFV LLYLFFTLTI GFSIFLAEVA  60
   61 MGRLSKSDLA NAYSNLAIKY GNRWRYGGVF MLGGIFILSF YLVIMGWVLK YTVVSLYYLP 120
  121 KTLDEAASNF QNVITTNLTS SVFFFTLSFF LTLLIVSKGL IKGIEKLNVV IMPSLFLMLV 180
  181 FMLFYCMGFK QGFANAFSYL FYPDFSHFKF SSIAEALGLA FFTLCLGIGC IVTYSSALDK 240
  241 KTNFIKSSVY IVLINLLISF IMGLIVFTFI FEFGADPHTQ GAGIVFVSLM SLFNQLGALG 300
  301 YIFAFCFFLA LFFAGITSAI SMIEPLTFYM INNYQISRVK ALFLIGLFVF VFGICCILSL 360
  361 NLNFFSMFSF FGKDFFTLLD KLTSNFLLPL GAIVCSIFVG FFMNKKQIYK IFSKFISRKI 420
  421 FLIWLFFIRF ISPIAIILVM CYQIFV