YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237745, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.94
Transmembrane Helix	8	26	0.97
Non-Cytoplasmic	27	32	0.85
Transmembrane Helix	33	53	0.93
Cytoplasmic	54	87	0.98
Transmembrane Helix	88	109	0.94
Non-Cytoplasmic	110	116	0.83
Transmembrane Helix	117	138	0.95
Cytoplasmic	139	157	0.93
Transmembrane Helix	158	182	0.91
Non-Cytoplasmic	183	190	0.83
Transmembrane Helix	191	213	0.89
Cytoplasmic	214	220	0.86
Transmembrane Helix	221	241	0.89
Non-Cytoplasmic	242	252	0.81
Transmembrane Helix	253	276	0.91
Cytoplasmic	277	283	0.89
Transmembrane Helix	284	305	0.91
Non-Cytoplasmic	306	323	0.89
Transmembrane Helix	324	346	0.91
Cytoplasmic	347	365	0.85
Transmembrane Helix	366	390	0.84
Non-Cytoplasmic	391	398	0.69
Transmembrane Helix	399	419	0.75
Cytoplasmic	420	435	0.79
Transmembrane Helix	436	458	0.80
Non-Cytoplasmic	459	464	0.88
Transmembrane Helix	465	487	0.89
Cytoplasmic	488	507	0.93
Transmembrane Helix	508	529	0.91
Non-Cytoplasmic	530	542	0.85
Transmembrane Helix	543	567	0.85
Cytoplasmic	568	573	0.90
Transmembrane Helix	574	594	0.94
Non-Cytoplasmic	595	659	0.97
Transmembrane Helix	660	683	0.90
Cytoplasmic	684	703	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQLSTKILW LFVATLGAIC FGYLALQNGE SVSAIYLVVA AVCIYMIGYR FYGRFVAYKV  60
   61 LELDKNRATP ALVENDGRDF VPTNKAVLFG HHFAAIAGAG PLVGPILAAQ MGYLPSMLWI 120
  121 LVGGVLAGAV HDFVVLFIST RRKGRSLGEM IKDEMGKFTG GVAMVAIFGI MLIIIAILAM 180
  181 VVVKALAESP WGLFTIAMTI PIAIFMGIYM RFIRPGRVGE ASIIGFVLLI LAIHYGSVIA 240
  241 ADPYWAKIFT LEAPILAIVM MAYGFIASVL PVWFLLAPRD YLSTFLKIGV IVVMAVAIVL 300
  301 VAPDLQMPKA NTQYFDGTGP VFAGGVFPFL FITIACGAIS GFHALISSGT TPKMLENETH 360
  361 ALAVGYGSML AESAVAIMAL ICACILHPGL YFAINSSSAL IGTDVVNVAQ TISSWGFSIT 420
  421 PEEITTLTTN IGEHTILSRT GGAPTFAIGV ALILHELFGG VDLMAFWYHF AILFEALFIL 480
  481 TAVDAGTRAC RFMVQDILGN VYKPLGDIHN YPAGLLATAL SVAGWGYFLY QGAIDPKGGI 540
  541 YTLWPLFGVS NQMLAGMALL LATTILVKMG KARYTWVTLV PAVFVLVATL YGGIQKIMPY 600
  601 EEGNKVANAV SHVAAVSIQS QKIKDLEFKL NNTKDEKEIS VIKKEISIAT QSKVGNLLNA 660
  661 ILCVFFMIAT LLVIISCIGI CLGKIKIPLK ETKYIKIDEF QKI