YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237732, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.58
Transmembrane Helix	21	43	0.86
Non-Cytoplasmic	44	86	0.55
Transmembrane Helix	87	121	0.72
Cytoplasmic	122	148	0.86
Transmembrane Helix	149	171	0.90
Non-Cytoplasmic	172	198	0.95
Transmembrane Helix	199	220	0.92
Cytoplasmic	221	230	0.82
Transmembrane Helix	231	251	0.94
Non-Cytoplasmic	252	269	0.84
Transmembrane Helix	270	291	0.86
Cytoplasmic	292	322	0.90
Transmembrane Helix	323	346	0.87
Non-Cytoplasmic	347	368	0.94
Transmembrane Helix	369	392	0.90
Cytoplasmic	393	406	0.83
Transmembrane Helix	407	426	0.88
Non-Cytoplasmic	427	434	0.74
Transmembrane Helix	435	455	0.90
Cytoplasmic	456	488	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLDIMLDFA NKASDIIANK IVPNTDIIMV VLLIVCGLYY SFLTRFVQFR MLSSVFKILT  60
   61 EKNEGHAKEH ISPFQALMIS TASRVGIGNI AGISLALATG GAGALFWMWV MAFFGGASAF 120
  121 AESTLAQVYK SKDDTGGFKG GPAYYIKKAL GSHFFGAFFA FILIITYAYG FNGLQSQTMT 180
  181 SSFKVYYDMF NPNAAVDFAS SSWPMIIGIV LTIFGAWMFF SHHTKIGKIS SLIVPFMALA 240
  241 YVLLAVIAVL MNFDKIPSVI HMILQSAFDF KAIFGGFAGS ALVIGIKRGL FSNEAGMGSA 300
  301 PNAAAAALTS HPAKQGVIQA FSVLIDVVVC TSSGFLVLFS MAYLGLGESK IDGGMPLVQE 360
  361 AMREYYGSFG IHFITIAIVL FAITSLIGNY YYAQANVKYL TNSKFVMNLF RITAVAMIFI 420
  421 GSQMNLKLAW NLADLTMAFM ATTNIISLLL LGGIVNKVLK DFNTQQKSGI DPKFNASKLG 480
  481 IKNAECWD