YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237730, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQKNIRIFV FFVIIILWGY FSFPIEILKI QDPSGVVSYG YTENAKAYLK SYLITLLLTA  60
   61 CAVIIGVIIG FSLAILYFSK FKTLNFIIDE YIDIIRGTPV ILQLMIFAFV IFTFIDNLYA 120
  121 AILALGLNSS AYIAEIVRSG INSVDKGQME AARAMGLDYK TSMKEIILPQ ATKNILPALA 180
  181 NEFISLFKET SVVGFISVID ITMQSQSLQA VLYNPKPIIF TGLVYYVSVK IFSYFAKKLE 240
  241 LRMNKND

Type	Start	End	Confidence
Cytoplasmic	1	7	0.90
Transmembrane Helix	8	28	0.93
Non-Cytoplasmic	29	53	0.90
Transmembrane Helix	54	78	0.91
Cytoplasmic	79	98	0.82
Transmembrane Helix	99	123	0.81
Non-Cytoplasmic	124	216	0.65
Transmembrane Helix	217	234	0.54
Cytoplasmic	235	247	0.71