YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AROA_CAMJR
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIYKLQTPV NAILENIAAD KSISHRFAIF SLLTQEENKA QNYLLAQDTL NTLEIIKNLG  60
   61 AKIEQKDSCV KIIPPKEILS PNCILDCGNS GTAMRLMIGF LAGIFGFFVL SGDKYLNNRP 120
  121 MRRISKPLTQ IGARIYGRNE ANLAPLCIEG QKLKAFNFKS EISSAQVKTA MILSAFRADN 180
  181 VCTFSEISLS RNHSENMLKA MKAPIRVSND GLSLEINPLK KPLKAQNIII PNDPSSAFYF 240
  241 VLAAIILPKS QIILKNILLN PTRIEAYKIL QKMGAKLEMT ITQNDFETIG EIRVESSKLN 300
  301 GIEVKDNIAW LIDEAPALAI AFALAKGKSS LINAKELRVK ESDRIAVMVE NLKLCGVEAR 360
  361 ELDDGFEIEG GCELKSSKIK SYGDHRIAMS FAILGLLCGI EIDDSDCIKT SFPNFIEILS 420
  421 NLGARIDY

Type	Start	End	Confidence
Cytoplasmic	1	92	0.57
Transmembrane Helix	93	112	0.68
Non-Cytoplasmic	113	428	0.81