YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_CAMJR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEEKNYELW LDNYFFKPNF WQKCLAFILL PLSVLYAFFA ILNTFFRKKI VFKKPVISVG  60
   61 NLSFGGNGKT PLCKAIAREF DGVFIVLRGY KRKSKGLFVV KNQNEILCTL VQSGDEAMEY 120
  121 AFEENIKGVI VSEDRVKGIE KAFELGAKIV VLDDAFSKFH IKKFDILLES KIKPYFDFTL 180
  181 PSGAYRLPKF YEKRADFIAL EGRDFVRYSF VKENPKAVLA TAIAKPFRLY EHFIKARACY 240
  241 FFKDHYEFKK EELENLLKKH NCDTLMLTFK DFVKVKDFGF KCQIIELNIE LKDSLREKIK 300
  301 TYIKEFEQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.54
Transmembrane Helix	20	46	0.79
Cytoplasmic	47	308	0.52