YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237521, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDFILAQA PAFLTAAWLT IKLSFFGIIF SLIIGLFCIL MSYFKIKILE NICKLYIEFS  60
   61 RNTPLLIQLF FLYYALPKFN IHLEQIPPLN LICLSVEETL RPSFACAIVG LSFLGGSYMA 120
  121 ESLRAGFEAI RKQQFEAGLS LGFSKFGNLR YVILPQALAI SMPSISANII FLIKETSVVS 180
  181 IIALPDLVNL MKSLNSLTYK TDELLFLLFM GYLCIILPLS FILLKFEKRL LYA

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.83
Transmembrane Helix	21	44	0.89
Cytoplasmic	45	61	0.82
Transmembrane Helix	62	77	0.68
Non-Cytoplasmic	78	99	0.66
Transmembrane Helix	100	120	0.72
Cytoplasmic	121	151	0.78
Transmembrane Helix	152	173	0.73
Non-Cytoplasmic	174	203	0.77
Transmembrane Helix	204	224	0.95
Cytoplasmic	225	233	0.81