YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166124, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFTFEQIFI AMLLTLFAGF STAIGSIIAF FSRKDDLRVL SLGLGFSAGV MIYISFMEIL  60
   61 PTALKDFKNY YNSHWAELLG LACFFGGILI SLLIDKLIPE DVNPHEPKED LSELKICPLP 120
  121 QKGQNPPKFH PGEKLHQINT KALKRTGIFT ALAIAIHNFP EGFATFISSL DNLTLGIAIA 180
  181 IAVAIHNIPE GLAVSLPIYH ATGDKKKAFI YSALSGFAEP LGAFVGALIL LPFIGDLTLA 240
  241 ISFAVIAGIM VFISLDELLP AAKTYDKAHD SLYGLIAGMM IMALSLNLLE Y

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	31	0.94
Cytoplasmic	32	38	0.85
Transmembrane Helix	39	60	0.89
Non-Cytoplasmic	61	73	0.85
Transmembrane Helix	74	94	0.91
Cytoplasmic	95	145	0.91
Transmembrane Helix	146	167	0.79
Non-Cytoplasmic	168	174	0.68
Transmembrane Helix	175	199	0.80
Cytoplasmic	200	208	0.88
Transmembrane Helix	209	231	0.92
Non-Cytoplasmic	232	236	0.78
Transmembrane Helix	237	259	0.87
Cytoplasmic	260	270	0.84
Transmembrane Helix	271	289	0.93
Non-Cytoplasmic	290	291	0.87