YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57165991, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSSFFKSKK WALWAYLGLF LLLFFLYIQT SLNVAINSWY SDFYNVLQKP KIELLDSNST  60
   61 QKIEENLENN ATLIQEANQR AEQNFQKANF INKGALYYYQ NLLEYFFNSR AMIEKPNYSA 120
  121 SDFYALILVF LAIAIPYVLI ATINIYFASV YAFKWREAMT FSYLKFWKNK DDNIEGSSQR 180
  181 IQEDTYNFSK IVESLGLSFI KALMTLVAFI PILWSLSDVV SKALFANLSE NSSFYFLKNI 240
  241 DGLLVYIALL ISLGGLVVSW FVGIKLPGLE YNNQKAEAAF RKELVYAEDN RKEYAKNETM 300
  301 IELFTGLKFN YKRLFLHYGY FNIWLILFEQ MIVIVPFLII APGLFAGAIG LGIVMQINNA 360
  361 FDQVRSSFSV FITNWTTITQ LRSIYKRLKE FEKNISYKS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.92
Transmembrane Helix	12	31	0.92
Non-Cytoplasmic	32	125	0.96
Transmembrane Helix	126	148	0.92
Cytoplasmic	149	196	0.95
Transmembrane Helix	197	217	0.87
Non-Cytoplasmic	218	241	0.89
Transmembrane Helix	242	264	0.92
Cytoplasmic	265	320	0.92
Transmembrane Helix	321	355	0.73
Non-Cytoplasmic	356	363	0.57
Transmembrane Helix	364	379	0.41
Cytoplasmic	380	399	0.67