YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57165990, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSVIFGFV LSLILHTLVL MFFLFSFYTQ EKSSGVDFKQ GAEFTSIMMV SELPIGELKE  60
   61 VSIDQKKSNS QDKNKKQDER ISLNSQDKNA VLKVQKKIEK QDENQAQKEI ANASENSKFK 120
  121 NESLSAPLQS NEDKTQTIVS GNAKEQVKSY QALLMAHLTK FKKYPQEAIM QKQEGVVRIR 180
  181 VSIDESGNVL SKELKKSCPY AALNDEALSL FKRASPLPKP PKEMLKNGDK ISFVMPIDYN 240
  241 IKDYLGKK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.61
Transmembrane Helix	7	28	0.72
Non-Cytoplasmic	29	248	0.92