YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57165981, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLLIIGAG GVSRVATVKC AINSDTFSKI TLASRTKSKC DEIATFIKER LGVQIETAQI  60
   61 DADDSNAVVE LIKKTGAQIL LNVALPYQDL SLMDACIKAG IDYIDTANYE HPDLAKFEYK 120
  121 EQWVRNDEFK QAGILGLLGS GFDPGVTNVF CAYAQQNLFD EISYIDILDC NAGDHGYAFA 180
  181 TNFNPEINLR EVSAKGRYWE NGKWIETQPM EIKMEWDYPE VGVKDSYLLY HEELESLVKN 240
  241 IKGLKRIRFF MTFGQSYLTH MKCLENVGML GIKPVIHQGK EIIPIEFLKT LLPDPASLGP 300
  301 RTKGYTNIGC VIRGKKDGKD KQVYIYNVCN HEECYKETGA QAVSYTTGVP AMIGTKLIAK 360
  361 GIWQGKGVFN MEEFDAKPFM EELNSQGLPW KIIEMTPSLG E

Type	Start	End	Confidence
Signal Peptide	1	20	0.77
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	401	0.99