YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57165976, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.93
Transmembrane Helix	15	35	0.92
Non-Cytoplasmic	36	42	0.77
Transmembrane Helix	43	64	0.89
Cytoplasmic	65	93	0.92
Transmembrane Helix	94	113	0.87
Non-Cytoplasmic	114	116	0.68
Transmembrane Helix	117	135	0.90
Cytoplasmic	136	141	0.81
Transmembrane Helix	142	161	0.94
Non-Cytoplasmic	162	166	0.74
Transmembrane Helix	167	188	0.92
Cytoplasmic	189	207	0.93
Transmembrane Helix	208	230	0.91
Non-Cytoplasmic	231	236	0.81
Transmembrane Helix	237	256	0.94
Cytoplasmic	257	271	0.79
Transmembrane Helix	272	292	0.92
Non-Cytoplasmic	293	294	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTFWIKFKD ILELVVFKHS IFALPFLFSS MIVASKLAND TAWFGFKALI LGIICAVSAR  60
   61 NFAMATNRLM DEDIDKDNPR CANRPNVSGK IGRKSVWIFI IINALIFISC SYFINTLAFY 120
  121 LSFPVLLVLA IYSAFKRFSS LAHLVLGFCL GLAPIAGSVI IMGEIHIYSV ILCLGVTFWT 180
  181 AGFDLLYSLQ DMEYDKKIGL HSIPAKFGSK ATLFISAFCH ILAVLFWLLF VWEVWGVALG 240
  241 KIALIGVIIS GIILALEHKI VHKNFAHIDR AFFTLNGYLS IIFFIFIWID LLWN