YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57165894, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.96
Transmembrane Helix	12	33	0.92
Cytoplasmic	34	58	0.91
Transmembrane Helix	59	80	0.91
Non-Cytoplasmic	81	87	0.80
Transmembrane Helix	88	106	0.98
Cytoplasmic	107	126	0.91
Transmembrane Helix	127	150	0.88
Non-Cytoplasmic	151	171	0.91
Transmembrane Helix	172	194	0.85
Cytoplasmic	195	209	0.94
Transmembrane Helix	210	230	0.94
Non-Cytoplasmic	231	252	0.93
Transmembrane Helix	253	275	0.89
Cytoplasmic	276	284	0.84
Transmembrane Helix	285	306	0.93
Non-Cytoplasmic	307	333	0.87
Transmembrane Helix	334	354	0.94
Cytoplasmic	355	374	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFGLELEGL QIYWWLILSL LGGLLVFMFF VQGGQTLIDE LSKDELEKTM LVNSLGRKWE  60
   61 LGFTTLVLFG GAAFAAFPLF YSTSFGGAYW AWLCILFCFI LQAVAYEYRK KENNVYGSKT 120
  121 YEIFLKINGY LGVFLIGVAV SSFFSGSEFI LNEHNFVSWQ NPLHGLELLL NPFNYLLGLA 180
  181 LVFLARLLGA AYFMNNINDE NIKIRAMKKL MVNSILFLPF FLGFLVWIFL KDGFSVDANG 240
  241 VVSMSANLYL YNFLNQMIFA ILLVVGVILV LLGMVQGAKG CSKAIFTLGL GTVLTVFALL 300
  301 SSIGLGQSAF YPSLSDLQSS LTLKNASSSY YTLSVMAYVS LLVPFVLAYI IYVWNAMDKV 360
  361 KITREEIAND DHAY