YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57165888, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.92
Transmembrane Helix	17	38	0.94
Cytoplasmic	39	44	0.81
Transmembrane Helix	45	63	0.94
Non-Cytoplasmic	64	78	0.80
Transmembrane Helix	79	98	0.91
Cytoplasmic	99	118	0.89
Transmembrane Helix	119	152	0.79
Non-Cytoplasmic	153	161	0.53
Transmembrane Helix	162	189	0.78
Cytoplasmic	190	195	0.63
Transmembrane Helix	196	217	0.89
Non-Cytoplasmic	218	225	0.52
Transmembrane Helix	226	245	0.72
Cytoplasmic	246	251	0.39
Transmembrane Helix	252	272	0.84
Non-Cytoplasmic	273	296	0.48
Transmembrane Helix	297	319	0.84
Cytoplasmic	320	327	0.45
Transmembrane Helix	328	351	0.53
Non-Cytoplasmic	352	371	0.74
Transmembrane Helix	372	393	0.90
Cytoplasmic	394	403	0.74
Transmembrane Helix	404	426	0.86
Non-Cytoplasmic	427	444	0.64
Transmembrane Helix	445	471	0.69
Cytoplasmic	472	486	0.59
Transmembrane Helix	487	518	0.52
Non-Cytoplasmic	519	530	0.50
Transmembrane Helix	531	554	0.88
Cytoplasmic	555	565	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQILTWQQI YDPFSNIWLS ALVAFLPILC FLVCLVVLKL KGYQAGFLTV ILATLVALFA  60
   61 YKMPWNLVGA SFIQGFTNGM WPIAWIIIAA IFLYKLSIKS GSFEIIKKSV MSITPDHRIQ 120
  121 VILIGFCFGS FLEGAIGFGG PVAITAALLV GLGLRPLQAA GLCLIANTAP VAFGAVGIPI 180
  181 IAMANLVGIE QHSVSAMVGR MLVPLSLTIP FFIVFLMDGF KGIKETFPAI LVAALSFTTT 240
  241 QFLSSNHLGA ELPDIISAVV SLAVTTVFLK FWKPKNIFRF DNESNFTQDN TLSFNQILKA 300
  301 WSPFILLIVC IIIWTQPWFK ALFDKDGILS YTSITLQFSN ITTGILSPSI TGIGEAKPLS 360
  361 LALGVDLING KTVAQAGTAI LLAAFLTIAI LKIKAEDAAE CFWVTLKEMA IPCITIGLVV 420
  421 AFAFISKNSG MSTTLGLAFA HTGDAFSFFS PIIGWIGVFL TGSDTSANLL FGTLQQVSAQ 480
  481 KLGISEALFL AANSVGGVVG KMISPQSIAI ACAAVGLVGK ESDLFKFTLK YSVAFIILIG 540
  541 IWTCIIAFFL QGIIPEVISE IIKKN