YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57236941, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAKSRIAI LGTGGTIAGF IDSTIATTGY TAGAIDIDVL IKAVPQIRDL ADISWEQIAN  60
   61 IDSSNMCDEI WLRLAKKIAK LFAEGIDGVV ITHGTDTMEE TAYFLNLTIK SDKPVVLVGA 120
  121 MRPSTAISAD GPKNLYNAVA LVANKEAKNK GVMVAINDKI LSARGVVKTH SLNVDAFSSP 180
  181 DFGDLGYIVD GKVFFYNNVT KAHTKNAPFD VSKLTSLPKV DILYSYSNDG SGVAAKALFE 240
  241 HGTKGIVVAG SGAGSIHKNQ KDVLKELLKK GLKVVVSSRV VAGCVAVSDS DEKLGFISAE 300
  301 DLNPQKARVL LILALTKTSD PKKIQEYFLK Y

Type	Start	End	Confidence
Signal Peptide	1	26	0.72
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	331	0.99