YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57236932, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIIMILCL SYANIVFAVD MITPIPNSIS YDKEKAKLGK SLYMDKSLSK DGKVSCNTCH  60
   61 RLDQHGVDGL EFSIGVDNQL DKPFNTPTTF NSVFNFVQFW NGRAKDLTEQ AMGPFFNPKE 120
  121 MGLSPELLLQ KVNSNENYVK TFKKLYGEVT VENIALAIAE FEKTLITPNS PFDRYLSGDQ 180
  181 NAISTQAKKG YEDFKANGCI SCHQGQNIGG NMFQKIGIFE EYPNQEDLGR YEITKREADK 240
  241 MVFKVPSLRN IAKTAPYFHD GSIPTLDACV QFMAYYQLGK FLDQETVDNI VAFLESLTGE 300
  301 YHDK

Type	Start	End	Confidence
Signal Peptide	1	18	0.96
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	304	0.99