YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57165733, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEINKTKNF YTLMCLAGFL IILLPVGIAN LIFGYMLGDS PCTLCWGQRE AMIFIGVMAL  60
   61 FIVRYGMKGK YLAALLIMTA VGLYQSFAHY GNHAHRDLDQ GFGLAVFGIH TYFWAEVVFW 120
  121 AVVLLLGVIF AFAPKFNAFE AELNGEKFRK YTKFSFAAVL ISAIIVASNV FQAFVSTGIP 180
  181 PYVGQGDPVR FSLNPKYIIW SKEGWNGLWQ NISFLGKRDV KAPDYAFAPA SEKLGIKFDN 240
  241 DINNAPFAKI NDELKITNEQ TINFDKAINT LDYINNEFVA SSKWDVAFLD NNFSVKEGFE 300
  301 LDPYFSATID PIIGIIPYMN DKFILMGSNK SFLRFAKNPN ASEEDIAKQY ADFVKGNDKF 360
  361 KGQGESLGRG RLDTVRAKFN HVASMTTDGN YLYLATVPNN KDAKTFVISK VSLKDRVLSG 420
  421 EFTPKANLKE GKTLGDLYVT SMTFKDGEIY ALSKNHNVIA VIDPVKEEVV KTIAFPSSIT 480
  481 NARSIFFKDG KINILSYQDG ANKLYTLN

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	33	0.90
Non-Cytoplasmic	34	44	0.82
Transmembrane Helix	45	65	0.88
Cytoplasmic	66	70	0.85
Transmembrane Helix	71	91	0.90
Non-Cytoplasmic	92	111	0.92
Transmembrane Helix	112	133	0.92
Cytoplasmic	134	153	0.87
Transmembrane Helix	154	175	0.91
Non-Cytoplasmic	176	508	0.99