YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57236920, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.56
Transmembrane Helix	18	42	0.82
Non-Cytoplasmic	43	60	0.61
Transmembrane Helix	61	81	0.85
Cytoplasmic	82	92	0.46
Transmembrane Helix	93	111	0.66
Non-Cytoplasmic	112	112	0.43
Transmembrane Helix	113	132	0.74
Cytoplasmic	133	141	0.71
Transmembrane Helix	142	164	0.80
Non-Cytoplasmic	165	187	0.93
Transmembrane Helix	188	208	0.95
Cytoplasmic	209	233	0.90
Transmembrane Helix	234	251	0.85
Non-Cytoplasmic	252	254	0.56
Transmembrane Helix	255	275	0.74
Cytoplasmic	276	281	0.61
Transmembrane Helix	282	303	0.85
Non-Cytoplasmic	304	324	0.65
Transmembrane Helix	325	349	0.86
Cytoplasmic	350	354	0.47
Transmembrane Helix	355	381	0.79
Non-Cytoplasmic	382	410	0.63
Transmembrane Helix	411	432	0.77
Cytoplasmic	433	433	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLTNPIII SVVLMTLLCL FRFNVLLSLL ISALVAGVFS HLELVDTMNI LISGMKENLK  60
   61 TALSYILLGA IAAAISKTNL TAYLIKIVSH FISHKKYLLL LSIALISCFS QNLIPIHVAF 120
  121 IPLLIPPLLS LFNKLKIDRR AVACALTFGL TTPYMVLPVG FGLTFQDLLK DNLNANNVSV 180
  181 SLNDVTNTMY FAAICMIAGL FLALFVFYRK SREYQEVEIA KVDLENLEMT RKEWGVLAGL 240
  241 VLTLILQILT MNLPLSGLLG FVLMVILGGV EFSKVNEVFD DGLKMMGFIA FVILVAAGYG 300
  301 EVLKESGSVV DLVNSVVPWM EQSKFLAVFF MLLIGLIITM GIGTSFGTIP IIATLFCPIC 360
  361 LELGFSTALI IFILGVAGAL GDAGSPASET TMGTTVGLNA DKQHDHIKDT CIPTFIFYNG 420
  421 PLLILGSIIA MFL