YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56965511, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.94
Transmembrane Helix	8	30	0.92
Non-Cytoplasmic	31	64	0.91
Transmembrane Helix	65	85	0.91
Cytoplasmic	86	92	0.80
Transmembrane Helix	93	113	0.93
Non-Cytoplasmic	114	119	0.77
Transmembrane Helix	120	141	0.91
Cytoplasmic	142	148	0.86
Transmembrane Helix	149	171	0.92
Non-Cytoplasmic	172	190	0.92
Transmembrane Helix	191	211	0.91
Cytoplasmic	212	217	0.71
Transmembrane Helix	218	235	0.72
Non-Cytoplasmic	236	240	0.55
Transmembrane Helix	241	264	0.87
Cytoplasmic	265	279	0.70
Transmembrane Helix	280	301	0.85
Non-Cytoplasmic	302	306	0.83
Transmembrane Helix	307	326	0.91
Cytoplasmic	327	346	0.93
Transmembrane Helix	347	370	0.92
Non-Cytoplasmic	371	397	0.86
Transmembrane Helix	398	418	0.93
Cytoplasmic	419	426	0.82
Transmembrane Helix	427	446	0.94
Non-Cytoplasmic	447	451	0.73
Transmembrane Helix	452	473	0.91
Cytoplasmic	474	482	0.82
Transmembrane Helix	483	503	0.89
Non-Cytoplasmic	504	527	0.68
Transmembrane Helix	528	546	0.92
Cytoplasmic	547	567	0.72
Transmembrane Helix	568	597	0.82
Non-Cytoplasmic	598	611	0.58
Transmembrane Helix	612	632	0.86
Cytoplasmic	633	640	0.48
Transmembrane Helix	641	659	0.86
Non-Cytoplasmic	660	662	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEQGKSVFY SFFLLIIGLS LLLVISGLHL TQGQAPFTLK ELVLGLWEGD GRIQSVVFGI  60
   61 RMPRVAVGLL AGGALAMAGL VLQTLTKNPL ASAGTLGINA GAYFMVVAAA VFFPGLNSSY 120
  121 PFIASFLGSA FAALLVFSLA GRAMDPVRVA LTGMIVSLLF AAVTSGLQLM FEQETNGLFL 180
  181 WGAGTLIQND WSGFRFALPF IVCAGLLLLL LGKQFDLLLL GEEAAAGLGA SIQRIKAAGW 240
  241 LLAIMLAAAT VSVAGPIGFI GLMAPHIVRM LGIRGHLQQL IHAFVWGAFL LIAADVLARF 300
  301 IQPGSEIPVG AITALIGGPW LMYLAYRTGK RYKGQNQTLR GNRSKLSFPW LITSMVAALL 360
  361 VVAIGALAFG GGSFYSFSEM VSGALFDTVT VQFRWPRVLV AFLVGSLLAL CGVLLQSVLR 420
  421 NPLGDPSILG ITSGGGVGAL SVIVLFPSLS FAWVPVGAAT GAGLAIAIIL LATKRSNWEP 480
  481 ISLALMGVAV SAMGSGIIQI LTVKAGVGVA PVLLWLAGST YGMNWQDVWF LAFVLIALVP 540
  541 ISYSFSRQLD VLALNQEVSV TLGLRIQLVR VLVLLLAVGA GAAAVAVAGA ISFIGLLAPH 600
  601 AARGIVGVKT RFVVPVSMLL GGILLVTADL LGRLVLYPKD IPSGLLVAII GAPYLLYIMK 660
  661 KL