YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56911673, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.92
Transmembrane Helix	31	50	0.95
Non-Cytoplasmic	51	70	0.91
Transmembrane Helix	71	93	0.90
Cytoplasmic	94	101	0.84
Transmembrane Helix	102	121	0.90
Non-Cytoplasmic	122	131	0.72
Transmembrane Helix	132	154	0.86
Cytoplasmic	155	177	0.85
Transmembrane Helix	178	200	0.88
Non-Cytoplasmic	201	217	0.75
Transmembrane Helix	218	241	0.82
Cytoplasmic	242	252	0.73
Transmembrane Helix	253	272	0.51
Non-Cytoplasmic	273	278	0.59
Transmembrane Helix	279	300	0.95
Cytoplasmic	301	324	0.56
Transmembrane Helix	325	359	0.70
Non-Cytoplasmic	360	386	0.64
Transmembrane Helix	387	406	0.96
Cytoplasmic	407	422	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFIDFLEK RVSNPMARLA EQRHLLAVRD GVVSSLPFII VGSFFLIIAF PPLPESWGMT  60
   61 QWATENADQI LIPYRMTMFI MSLYVAFGIG YNLAQSYKVD PLSGGQIAVA SLLLTITPSV 120
  121 VEELGFVLPM QYLGGSGLFV TIIVSILSVE IFRICKQRNI TIRLPEAVPA SVSRSFEALI 180
  181 PVAIVIMLMT LITIIMGVNL HALVEKLTVP LVTAGDSLFG VLVPVFLITF FWSFGIHGVS 240
  241 VVGSVARPLW ETYLLKNGEA VASGASELPH IAPEPLYQWF IWIGGSGATL GLVIVMLIFA 300
  301 RSKYLKSLGR TVAVPSIFNI NEPVIFGLPI VLNPILVIPF IITPIITAVI AYLATSVGLV 360
  361 SPTFIKAPWT LPAPIGAYLA TGGDWRSIIL VLVNLAISVV IYLPFLRIYD KKMLAMEQNE 420
  421 EQ