YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56911654, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	31	0.91
Non-Cytoplasmic	32	65	0.92
Transmembrane Helix	66	87	0.89
Cytoplasmic	88	95	0.83
Transmembrane Helix	96	118	0.89
Non-Cytoplasmic	119	141	0.93
Transmembrane Helix	142	164	0.91
Cytoplasmic	165	192	0.91
Transmembrane Helix	193	214	0.91
Non-Cytoplasmic	215	246	0.94
Transmembrane Helix	247	270	0.91
Cytoplasmic	271	291	0.95
Transmembrane Helix	292	315	0.84
Non-Cytoplasmic	316	353	0.93
Transmembrane Helix	354	376	0.91
Cytoplasmic	377	384	0.91
Transmembrane Helix	385	407	0.90
Non-Cytoplasmic	408	413	0.71
Transmembrane Helix	414	432	0.92
Cytoplasmic	433	464	0.96
Transmembrane Helix	465	489	0.85
Non-Cytoplasmic	490	521	0.91
Transmembrane Helix	522	543	0.90
Cytoplasmic	544	551	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPKAFNGWN WITLSIVLFF ALFILFPVVL VLNKSIYNGE AGRFTLEHFS LFFERKFYWV  60
   61 TLWNSIKVTV VATVLAVLIG LPLAYMLRRV KIFGSGIVQI LIIVSYISPP FIGAYAWIQL 120
  121 LGRSGVITKW INDTFQLQFD GIYGFAGIVL VLTLQSFPLI FIYISGALKN LDNSLIEAAE 180
  181 SLGYSGVQRV IKIVVPLIAP TILASSLLVF MRVIADFGTP MLIGEGYRTI PVLIYTQFMS 240
  241 EVGGDAGFAA ALASIFIIVT IALFLVQRVI ARQYSYSMSA LRPMETKKST GLKNLLSHVA 300
  301 VYGVTLLAIL PQLVVVYTSF LETIGGQVYT GKFSLQNYEN ILFNRDLSMI LNTYQLGLIA 360
  361 IVVIVILGIL IAYLTVRKRN KVTSLLDTVS MLPFVIPGSV LAMALIFAFG EAPLYLTGTS 420
  421 LIMVLAFVIR RMPYTVRSST AIVSQISPSM EEAAISLGAS ERRTFFRVVV PMMMPGVLAG 480
  481 AIMSWMTILG ELSASIILYS TNTQTLAVSI YTEVIRGNFG NASAYSAILT VTSILSLFLF 540
  541 FKLTGKKEMN V