YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56963504, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRISGMSFNA GIFYSGAGFL ACAYYDEQGK LHSWAKPAGM QAYLQAGKLI VKTMPFRFVA  60
   61 LIIALLCLII VPKIIPTSWN GLPVYTFFYL LFAGHFLFPE PLKKYHGAEH KVFSAKGRIC 120
  121 TERLQAIKRA DIRNRGCSTG LVVVYFLSVF LLSGSLSLFT PFQQALMVSS YAALAVVALY 180
  181 QLFHRKPWLK GLEKSVLVLS YWLQLHVTTK EPDENHLQCA ISAYQQLGYV AFPENIKKRR 240
  241 LPRKENKGMA IADVSIIPIG TSSTSVSAYV AYIQQVLDHY EKEKQIRYEL TPMSTLIEAE 300
  301 LPVLFEVIQK IHEAPFEQGA LRTATSIRID DRRDQPLTMD GKRKSVQEKR IEQ

Type	Start	End	Confidence
Cytoplasmic	1	53	0.73
Transmembrane Helix	54	75	0.90
Non-Cytoplasmic	76	80	0.80
Transmembrane Helix	81	99	0.88
Cytoplasmic	100	135	0.95
Transmembrane Helix	136	158	0.88
Non-Cytoplasmic	159	164	0.71
Transmembrane Helix	165	184	0.92
Cytoplasmic	185	353	0.68