YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56963043, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISDLLKKE TMILDLASTT KEAVIDELIA KLGEAGRLND AEAYKKAILA REAQSTTGLG  60
   61 DGIAIPHAKT AAVKTPAIAF GRSKAGIDYD ALDGQPSHLF FMIAASEGAN NEHLATLAKL 120
  121 STYLMDDDFR KGLLNAASLD DILALIDEKQ AMEDKEAEPE EQTESASEDS GKFILAVTGC 180
  181 PTGIAHTFMA ADAIKKEATD RGYKVKVETN GSGGVKNRLK AAEIDEADGI IVAADTKVEM 240
  241 DRFSGKRVVI APVADGVRKP AELIDRSLSG KEPVYQGSGG KGENEQSEEK KSGGAAIYKH 300
  301 LMNGVSNMLP FVIGGGILIA LSFVFETAFG ADNPIRELLM AIGSENAFAL FIPVLAAFIA 360
  361 MSIADRPGFA PGLIGGFMAV NGHSGFLGGL LAGFLAGYLA LFVRKLLSGI PQSLEGLKTI 420
  421 LFTPVLNILF TGTIMYYLIA PLAWVNTGMQ NWLGDLGTGN MVILGTVLGI MMAIDMGGPI 480
  481 NKAAYTFGIA MIDAGNLGPQ AAVMAAGMVP PLGIAIATTF WKHKFTKQQR ESGRTNYVLG 540
  541 ASFITEGAIP FAAADPIRVI SASVVGAAVA GGLTGLFHIQ LPAPHGGIFT MFLVNESTWS 600
  601 YIGLYALAIA IGAIVTGIIY GIIKKPIENK

Type	Start	End	Confidence
Cytoplasmic	1	306	0.49
Transmembrane Helix	307	329	0.86
Non-Cytoplasmic	330	341	0.45
Transmembrane Helix	342	364	0.84
Cytoplasmic	365	378	0.37
Transmembrane Helix	379	402	0.85
Non-Cytoplasmic	403	419	0.47
Transmembrane Helix	420	445	0.81
Cytoplasmic	446	451	0.46
Transmembrane Helix	452	478	0.73
Non-Cytoplasmic	479	500	0.52
Transmembrane Helix	501	521	0.86
Cytoplasmic	522	558	0.76
Transmembrane Helix	559	581	0.90
Non-Cytoplasmic	582	600	0.89
Transmembrane Helix	601	623	0.94
Cytoplasmic	624	630	0.93