YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56909253, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METETQLATN PSPKRPDKKE NKAKSPWATM IVQLIENKLS LIGLIIIICF LLLALLAPYL  60
   61 TPYSFAETNS SIRLLPPSGD HWFGTDDLGR DVFTRVAYGA RISLLIGFFA VVGAMVVGTL 120
  121 LGLIAGFYGK WVDMLLSRVF DVMLAFPSIL LAIAIVAILG PSLSNAMLAI AIINVPIFAR 180
  181 LVRSKVISLK QEEFVMAARA QGMKNGRLLF HHILPNSMAP IIVQATLGFG VAIIEAAALG 240
  241 FLGMGASPPT PEWGKMLADS RGYIQNAYWS VLFPGLSIML VVLGFNMIGD GLRDALDPKM 300
  301 KGK

Type	Start	End	Confidence
Cytoplasmic	1	38	0.95
Transmembrane Helix	39	60	0.92
Non-Cytoplasmic	61	103	0.92
Transmembrane Helix	104	128	0.90
Cytoplasmic	129	138	0.77
Transmembrane Helix	139	159	0.92
Non-Cytoplasmic	160	165	0.67
Transmembrane Helix	166	182	0.92
Cytoplasmic	183	220	0.84
Transmembrane Helix	221	244	0.83
Non-Cytoplasmic	245	266	0.86
Transmembrane Helix	267	289	0.89
Cytoplasmic	290	303	0.86