YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56909252, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAYAIRRVL LLIPVLFGMT LVTFSIIQLI PGNPAQTILG EQATPQAIAA LEEQLGLNEP  60
   61 FWVQYGVYIS DLLSGDLGVS LRTNNDIAQE MWPYLAGTLE LTVFAMLFAI FVGVNAGIIS 120
  121 AWKQNSIFDY TSMVIALIGV SMPVFWLALM EQWFFAQELG WFPAFGRNNP REPVEAITHL 180
  181 YILDAALTGN WQQLETTLKH LVLPMVALGT IPMAIIARMT RSSMLEVLRS DYIRTVQAKG 240
  241 SNQSVVIYKH ALKNAFIPVI TVVGLQAGTL LGGAILTETI FSWPGIGRYI YDAISYRDYP 300
  301 VIQSGILVIA FIFVCINLVV DLLYAAIDPR IKYD

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.94
Non-Cytoplasmic	31	100	0.95
Transmembrane Helix	101	119	0.95
Cytoplasmic	120	129	0.75
Transmembrane Helix	130	150	0.91
Non-Cytoplasmic	151	199	0.92
Transmembrane Helix	200	219	0.93
Cytoplasmic	220	255	0.96
Transmembrane Helix	256	277	0.91
Non-Cytoplasmic	278	301	0.88
Transmembrane Helix	302	325	0.88
Cytoplasmic	326	334	0.92