YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56909220, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFISYMKAEN LKLKRTFARK MIGIVPLLTV AFSFIMNMEY FVYLTFNWWS ILFMPMMIAL  60
   61 FCALAHVREK QASNYNGIYS APVDLRLVWL AKASVIALYS LASQLIFLVI MFLIEMVVPL 120
  121 FPVGPFPVIA ACFLLWATTL WQIPFCLLLA KKFGFAVSLI VNLFGCLAFG IIAATKAYWW 180
  181 AWPWSWPIRA MSPTIGIHPN GLPLEEGDPL LSMTVIPIAI ILSLLLFAVL LMISGKSFAF 240
  241 AVVQKSKQEV A

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	38	0.94
Non-Cytoplasmic	39	47	0.67
Transmembrane Helix	48	67	0.95
Cytoplasmic	68	87	0.97
Transmembrane Helix	88	114	0.81
Non-Cytoplasmic	115	122	0.72
Transmembrane Helix	123	145	0.85
Cytoplasmic	146	154	0.76
Transmembrane Helix	155	178	0.88
Non-Cytoplasmic	179	212	0.91
Transmembrane Helix	213	235	0.87
Cytoplasmic	236	251	0.89