YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56909120, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.46
Transmembrane Helix	7	41	0.79
Cytoplasmic	42	53	0.58
Transmembrane Helix	54	76	0.85
Non-Cytoplasmic	77	101	0.79
Transmembrane Helix	102	126	0.86
Cytoplasmic	127	133	0.79
Transmembrane Helix	134	154	0.91
Non-Cytoplasmic	155	172	0.81
Transmembrane Helix	173	194	0.90
Cytoplasmic	195	226	0.89
Transmembrane Helix	227	248	0.92
Non-Cytoplasmic	249	267	0.80
Transmembrane Helix	268	289	0.86
Cytoplasmic	290	301	0.74
Transmembrane Helix	302	322	0.86
Non-Cytoplasmic	323	346	0.65
Transmembrane Helix	347	376	0.76
Cytoplasmic	377	421	0.52
Transmembrane Helix	422	443	0.83
Non-Cytoplasmic	444	447	0.73
Transmembrane Helix	448	468	0.94
Cytoplasmic	469	480	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFIVAAGI VLLLILITGF KLNTFVSLII VAFIVALALG MPLENVVSSI EGGLGGTLGH  60
   61 IALIFGLGAM LGRLIADAGG AQRIAMTLIN KFGEKRIQWA VVVASFIVGI ALFFEVGLVL 120
  121 LIPIVFSIAK ELRISILYLG IPMAAALLAT HSFLPPHPGP TVIAGEYGAD LGVVLLYGIM 180
  181 IAIPTVIIAG PLFTKVAKKI APDAFNKTGN IDSLGEQKTF KLEQTPGFGI SVLTAMFPVL 240
  241 LMAISTIVDL VQNSVGFEDN TIIEIIRLVG NPSSAMLLSL LLAFYTMGIA RKIPIKQVMD 300
  301 SCASSIAAIG MMLLIIGGGG AFKQVLIDGG VGDYVAELFK ETSMSPLLFA WLVAAILRIS 360
  361 LGSATVAAIS TAGLVVPMLA QYDVNLALVT LATGAGSSIC SHVNDAGFWM IKEYFGLSMK 420
  421 ETFSTWTILS TITSVVGLGF ILLFDASFII AGIAIVLISV VAIYFSTITP IKDKRKALGA 480
  481