YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56908808, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLKVAVVG CGSIAIHRHV PEYAANPNVE LVAFCDLNIE VAQKLADQYG VKQVYDSHEA  60
   61 MLKEAKMDAV SVCTQNVDHA QVSIDAANAG CHVLCEKPMA TSIEEAQQMI DAAKANNVKL 120
  121 MIGHNQRLMP PHVKAKEILQ SGKIGKPLTF KTTFGHGGPD SWSIQGKDTW FFQKDKAFVG 180
  181 AMGDLGVHKI DLMRWLFDEE VAEVAAFVET LDKDADVDDN ATTLLRMENG AIGTMAASWT 240
  241 YYKGEDNTTS IYGEKGVLEI HDDPNVQVVV KLADGTIERY SVGAIATNEA GGQVASGVID 300
  301 EFVDAIANDR TPSITGESAM ESLRTVLAAL ESTKSKTFVS VATIK

Type	Start	End	Confidence
Signal Peptide	1	24	0.62
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	345	0.99