YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56908333, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLEERYQAN RQIEPVQPAR MPGPINQTKP VFKNYTRQKK LDRLMIYLML VVLSILFILP  60
   61 FLWMVSTSIK TESQAISYPP TLWPAPFDFA NYREVFELVP FLQFYSNTIV VTGLTVIGTV 120
  121 ASSAVVAYAF ARIKGRGRSV WFILLLCTMM LPPQVTMIPV YLIFTELGWV NTFLPLVVPA 180
  181 FLGNAFFIFL LRQFFRAIPK ELEESAIIDG CSLFGIFWRI VVPLSKPALI TVAILSFMGS 240
  241 WNDFLTPLIY LNDIDKYTLA LGLQMFNGQQ TMQWGPMMAA STMVIFPLVV LFFIAQKHFI 300
  301 QGIALSGIKG

Type	Start	End	Confidence
Cytoplasmic	1	43	0.99
Transmembrane Helix	44	65	0.92
Non-Cytoplasmic	66	108	0.95
Transmembrane Helix	109	131	0.93
Cytoplasmic	132	139	0.92
Transmembrane Helix	140	163	0.91
Non-Cytoplasmic	164	171	0.82
Transmembrane Helix	172	195	0.87
Cytoplasmic	196	215	0.93
Transmembrane Helix	216	238	0.83
Non-Cytoplasmic	239	273	0.90
Transmembrane Helix	274	295	0.92
Cytoplasmic	296	310	0.91